PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10532_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 526aa    MW: 59349.5 Da    PI: 8.2094
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10532_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-077394426
                    ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                    ++C f++  G+C+ GdrC+F Hg
  Neem_10532_f_3 73 VPCYFYFN-GFCNKGDRCSFLHG 94
                    79******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.8922046IPR000571Zinc finger, CCCH-type
SMARTSM003560.972245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.156996IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-66994IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-47095IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-57394IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-57495IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MMLFPFQGID CEYRHNEVAR LNPRECWYWL SGNCLNPTCG FRHPPLEGHA TETPSESAAL  60
PCQSSIPMNK TSVPCYFYFN GFCNKGDRCS FLHGLDGSAA TAKPSKPAGA SKNALHSENK  120
TSGGNGAGSA PTETHPSPSE TTSKQAVHVR VQPNNDLLES STRSIPQQSA SLQRYLSESE  180
EAAVIKSDSI TLNKGFMKTK CYLYTDLSSE EQVDDRIGPE GRWESSLGFD VLVDNDNRPE  240
NLGYKDDPEY LLAINEDYRE LSGHLMRYDS EDPIGYVPVY HDAEPYEFET YNAHDYLDNQ  300
DILDDVTEHP SRSRGRMLDS ILSRKRKLLP MKLAVDDRVM DLRDVLRKRR VVDGHSVIHS  360
SRKHGSSRLV GQIKKRLGGH VMSQRLQRRL ASEFGANYIK SHGNKGIVLK RANWQGWPRP  420
SKCTMLRQHY KEKRSASRRS DISVISREPF SRERRSSQFS TTFIGPKSLA EIKEEKKKAE  480
GNGDCLGEMG NSTRILVDFQ GPKPLSEILK EKRRLDTIRD GDPSTE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475812.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
RefseqXP_006475813.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A067GL000.0A0A067GL00_CITSI; Uncharacterized protein
STRINGVIT_11s0016g04980.t011e-157(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16432710